Methods for Computational Genomics

Quality Control

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data

Versatile Quality Control Methods for Nanopore Sequencing

Variant Simulation

VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing

Evaluation of Structural Variant Calling Methods

Evaluation of germline structural variant calling methods for nanopore sequencing data

Copy Number Analysis

Nano-GLADIATOR: real-time detection of copy number alterations from nanopore sequencing data

Tandem Repeats Profiling

TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data

Single-cell Analysis of Structural Variants

Single-cell analysis of structural variations and complex rearrangements with tri-channel processing

Gene Expression Analysis

Effect of space flight on the behavior of human retinal pigment epithelial ARPE-19 cells and evaluation of coenzyme Q10 treatment

Long-read Sequencing of Malignancies

Nanopore sequencing for the screening of myeloid and lymphoid neoplasms with eosinophilia and rearrangement of PDGFRα, PDGFRβ, FGFR1 or PCM1-JAK2